Much more likely some buffer in either the serial<>USB adapter, or in the USB driver within Windoze. Nothing much you can do about them, apart from try another different brand adapter. Ones with FDTI chips seem to work better than many others.
You could also try separating the prompt and input like this:
[code:1:bf39c6e9cf]
Dim V As Byte
Print "c=continue e=enable";
Input V
print
[/code:1:bf39c6e9cf]
Maybe that gives you more control over what is printed.
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